capture-recapture

Statistical ecology

Developing, communicating and teaching methods and models for ecology and conservation biology.

Bayesian implementation of the robust design

Bayesian implementation of Pollock’s robust design capture-recapture models w/ Jags.

Bayesian SEM capture-recapture models

We had to dig out some #rstats #jags code to fit a structural equation capture-recapture model we developed w/ @SCubi25 in a 8-year old @ESAEcology paper (!), and it runs like a charm 🥳🍾#reproducibility ➡️ https://t.

Nimble and HMM

Playing around w/ awesome @R_nimble to fit multievent #HMM capture-recapture models to data - Code and data here https://t.co/2oHvsplahv Comments welcome 🤗 pic.twitter.com/tA89r80YYV — Olivier Gimenez 🖖 (@oaggimenez) December 2019

A review on the last decade of research on capture-recapture

A thread on my review of the capture-recapture literature for the conference Wildlife Research and Conservation 2019 https://t.co/dqz8kbLdym in Berlin 🇩🇪. Slides, analyses, data & #rstats codes available from https://t.co/s9sFbkZG4k 1/23 pic.

New preprint: Distribution and abundance of bottlenose dolphin (Tursiops truncatus) over the French Mediterranean continental shelf

New #preprint w/ @GIS_3M on Distribution and abundance of bottlenose dolphin (Tursiops truncatus) over the French Mediterranean continental shelf https://t.co/eNfgLCT4k4 - Soooo impressed by the huge collective field effort to collect photo-id on this iconic species!

New paper: Accounting for heterogeneity when estimating stopover duration, timing and population size of red knots along the Luannan Coast of Bohai Bay, China

New paper by @TamarLok 🤩👏 using integrated modelling of 8 years of resighting and count data and accouting for heterogeneity to show the key importance of the Luannan Coast of Bohai Bay (China) as a spring #stopover area for red knots https://t.

Local minima and multistate capture-recapture models

I thought I'd share some #rstats code about local minima in #multistate #capturerecapture models https://t.co/aJE33dBtdO using #Mark #Admb #Jags #Stan (#Nimble & #TMB to come). Largely inspired by Chapter 9 of the "Gentle introduction to Mark" by Cooch & White 😉 pic.

New paper!

New paper by #SarahBenhaiem & @LMarescot 🤩👏 "Robustness of Eco-Epidemiological Capture-Recapture Parameter Estimates to Variation in Infection State Uncertainty" https://t.co/ZvNghUHUUY #HMM #multievent #TMB #WomenInSTEM #carnivorepapersbywomen #heynas #serengeti pic.twitter.com/VT6iStk5UW — Olivier Gimenez 🍉 (@oaggimenez) 28 août 2018

New paper!

Special feature on Evolutionary #Demography by Takenori Takada & @Richshefferson in #Population #Ecology @SpringerJP_LS - We wrote "Estimating individual fitness in the wild using capture-recapture data" https://t.co/5u7x1UvRr5 #rstats code ➡️ https://t.