R

Fitting occupancy models in ADMB

Some time ago, a student of mine got stuck when fitting dynamic occupancy models to real data in Jags because of the computational burden.

Working group on animal/human demography

We organised a 2-day workshop on the metrics of longevity used in human and animal demography. The idea is to explore potential bridges between the two fields. Next meeting in April.

Workshop on issues in fitting hierarchical models in ecology

Frederic Gosselin, Etienne Rivot and I organised a 2-day workshop on issues in fitting hierarchical models in ecology. I gave a talk on “Local minima and multistate capture-recapture models”, slides and R code available on GitHub.

Analysing the social Star Wars network in The Attack of the Clones with R

This is a free adaptation of two (very) clever analyses made by others: The Star Wars Social Network by Evelina Gabasov in which program F# was mostly used to analyse the Star wars social networks

Self teaching reproducible research

I decided to teach myself how to do proper reproducible research. Many reasons to that: save time on the mid/long term, make my analyses open and criticizable, share with others, …

New kids on the Bayesian block

I attended Daniel Turek’s talk at ISEC about NIMBLE a neat alternative to WinBUGS and JAGS. It is developed by Perry de Valpine’s group at Berkeley and ‘lets you use BUGS models natively in R, program functions that use them, and compile everything via C++ for faster computing’.